Alfred: BAM alignment statistics, feature counting and feature annotation
Alfred is available as a Bioconda package, as a statically linked binary from the GitHub release page or as a minimal Docker container. Please have a look at Alfred’s documentation for any installation or usage questions.
Tobias Rausch, Markus Hsi-Yang Fritz, Jan O Korbel, Vladimir Benes.
Alfred: Interactive multi-sample BAM alignment statistics, feature counting and feature annotation for long- and short-read sequencing.